upset_plot: Create an upset graph, inspired from an UpsetR package, show...

In cturbelin/ifnBase: InfluenzaNet Data Analysis Base

Create an upset graph, inspired from an UpsetR package, show associations

Description

re-implementation of the graph to separate association computation and vizualization

Usage

upset_plot(
  data,
  sets,
  n.max = 40,
  point_size = 3,
  name_size_scale = 1,
  title = NULL,
  subtitle = NULL,
  caption = NULL,
  opts = list()
)

Arguments

data	data.frame() with data for each sets
sets	list of column names for each variable in sets
n.max	number of top obs to keep, (all if na)
point_size	size of point in intersection plot
name_size_scale	scale of labels size in intersection plot
title	title of the plot
subtitle	subtitle of the plot
caption	caption of the plot
opts	options for freq plot

Options

General options : - theme: add the theme to the plot - freq: frequency plot option - matrix: matrix plot option

Frequency plot options

bar.color

bar.fill

fill color

label

label of the axis

prop

list, Compute cumulative proportion options

Matrix plot options

point.color

Color of point

point.empty

Color if set size is empty

point.size

Size of the point

name.size

Size of the name

grid.color

Color of the grid

line.size

Size of the line connecting association

line.color

color of the line connecting association

set.labels

vector of labels of each set name or function(lab) to get set label from set name

order.freq

reorder set list by frequency

See Also

Other upset: apply_binary_mask(), create_binary_groups(), create_binary_mask(), get_labels_from_binary()

cturbelin/ifnBase documentation built on July 4, 2025, 6:23 p.m.