Files in cturbelin/ifnBase
InfluenzaNet Data Analysis Base
.Rbuildignore
.gitattributes
.github/workflows/r-cmd-check.yml
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
NEWS.md
R/00.R
R/concepts.R
R/db.r
R/episode_fusion.R
R/episodes.R
R/geography.r
R/ggplot2.R
R/graph.r
R/i18n.r
R/incidence_data_loader.R
R/incidence_design.R
R/incidence_rs_2014.R
R/incidence_rs_2014_daily.R
R/incidence_utils.R
R/onset.R
R/path.R
R/platform.R
R/platform_utils.R
R/recode.r
R/seasons.R
R/stats.R
R/strata.R
R/survey.r
R/survey_labeller.R
R/survey_load_data.R
R/survey_loader.R
R/symptoms.R
R/syndrome.r
R/syndrome_provider.R
R/syndrome_provider_2019.R
R/syndrome_provider_country.R
R/syndrome_provider_covid.R
R/syndrome_provider_ifn.R
R/syndrome_rs_2018.R
R/system.r
R/templates.R
R/upset.R
R/utils.R
R/week.r
R/zzz.R
README.md
TODO.fr
build.R
docs/data-analysis-guidelines.md
docs/incidence-computation.md
ifnBase.Rproj
man/FEVER.CODES.Rd
man/IncidenceDailyRS2014.Rd
man/IncidenceRS2014.Rd
man/NO_SYMPTOM.Rd
man/PROTECTED_QUESTIONS.Rd
man/SYMPTOMS_TOPICS.Rd
man/SurveyLabeller.Rd
man/SyndromeProvider.Rd
man/SyndromeProviderCountry.Rd
man/SyndromeProviderCovid.Rd
man/SyndromeProviderIfn.Rd
man/SyndromeProviderRS2019.Rd
man/add_path_prefix.Rd
man/apply_binary_mask.Rd
man/as_mapping.Rd
man/axis_week.Rd
man/base_onset_design.Rd
man/calc.conf.int.Rd
man/calc_adjusted_incidence.Rd
man/calc_age.Rd
man/calc_season.Rd
man/calc_season_fixed.Rd
man/calc_weekly_delay.Rd
man/calc_weekly_order.Rd
man/can_use_country.Rd
man/check_list_mapping.Rd
man/check_season_dates.Rd
man/check_survey_template.Rd
man/check_unique.Rd
man/complete_intake.Rd
man/complete_intake_strategy.Rd
man/compute_onset.Rd
man/compute_weekly_syndromes.Rd
man/concepts.Rd
man/constants.Rd
man/create_binary_groups.Rd
man/create_binary_mask.Rd
man/create_participant_weight.Rd
man/create_path.Rd
man/create_step_tracker.Rd
man/create_survey_definition.Rd
man/create_syndrome_columns.Rd
man/cut_age.Rd
man/dbConnect.Rd
man/dbQuery.Rd
man/db_equal.Rd
man/design_incidence.Rd
man/design_weight.Rd
man/episode_build.Rd
man/episode_compute.Rd
man/episode_compute_ariza.Rd
man/episode_compute_ecollan.Rd
man/episode_compute_souty.Rd
man/episode_design.Rd
man/episode_fusion.Rd
man/episode_fusion.simple_strategy.Rd
man/episode_fusion.worst_strategy.Rd
man/episode_fusion_strategy.Rd
man/episode_onset_design.Rd
man/episode_prepare_data.Rd
man/episode_select_participants.Rd
man/episode_strategy.Rd
man/format_week.Rd
man/freq_bool_by.Rd
man/freq_var_by.Rd
man/freq_vars_by.Rd
man/geo_base_level.Rd
man/geo_base_table.Rd
man/geo_check_level.Rd
man/geo_column.Rd
man/geo_definition.Rd
man/geo_hierarchy.Rd
man/geo_is_type.Rd
man/geo_level.Rd
man/geo_level_nav.Rd
man/geo_level_table.Rd
man/geo_normalize.Rd
man/geo_normalize.data.frame.Rd
man/geo_normalize.default.Rd
man/get_columns_for_incidence.Rd
man/get_current_paths.Rd
man/get_db_handle.Rd
man/get_default_color.Rd
man/get_geo_join.Rd
man/get_historical_seasons.Rd
man/get_historical_tables.Rd
man/get_labels_from_binary.Rd
man/get_option.Rd
man/get_season_dates.Rd
man/get_symptoms_aliases.Rd
man/gg_barplot_percent.Rd
man/graph.close.Rd
man/graph.hook.Rd
man/graph.open.Rd
man/graph.save.Rd
man/graph_colors.Rd
man/graph_get_last.Rd
man/i18n.Rd
man/i18n_inflect.Rd
man/i18n_load.Rd
man/i18n_names.Rd
man/ifnBase-package.Rd
man/init.path.Rd
man/is_syndrome_provider.Rd
man/iso_yearweek.Rd
man/join_surveyuser.Rd
man/keep_last_survey.Rd
man/load_geo_zone.Rd
man/load_platform.Rd
man/load_population.Rd
man/load_population_age.Rd
man/load_population_age.impl.Rd
man/load_results_for_incidence.Rd
man/make_week_index.Rd
man/merge_by_value.Rd
man/monday_of_date.Rd
man/monday_of_week.Rd
man/monday_of_year.Rd
man/multiple_freq.Rd
man/multiple_xfreq.Rd
man/my.path.Rd
man/output_incidence.Rd
man/override.Rd
man/parse_season.Rd
man/platform_define_survey.Rd
man/platform_env.Rd
man/platform_geographic_levels.Rd
man/platform_geographic_tables.Rd
man/platform_import.Rd
man/platform_options.Rd
man/platform_path.Rd
man/platform_season_history.Rd
man/plot_age_pyramid.Rd
man/polygon_ic.Rd
man/print.episode_design.Rd
man/print.fusion_strategy.Rd
man/print.fusion_strategy_dict.Rd
man/print.paths_definition.Rd
man/print.survey_definition.Rd
man/print.survey_error.Rd
man/print.survey_labels.Rd
man/print.survey_mapping.Rd
man/print.survey_recode.Rd
man/prop_by_weighted.Rd
man/raw_value.Rd
man/recode_alias.Rd
man/recode_intake.Rd
man/recode_var.Rd
man/recode_weekly.Rd
man/recode_weekly_date.Rd
man/recode_ynp.Rd
man/regroup.syndrome.Rd
man/relative_seasons.Rd
man/scale_x_wid.Rd
man/season_definition.Rd
man/share.cache.path.Rd
man/share.data.path.Rd
man/share.lib.Rd
man/share.lib.path.Rd
man/share.option.Rd
man/share_path.Rd
man/strategy_create_coding.Rd
man/survey_aliases.Rd
man/survey_default_language.Rd
man/survey_definition.Rd
man/survey_labeller.Rd
man/survey_labels.Rd
man/survey_load_all.Rd
man/survey_load_health_status.Rd
man/survey_load_options.Rd
man/survey_load_participants.Rd
man/survey_load_participations.Rd
man/survey_load_questions.Rd
man/survey_load_results.Rd
man/survey_load_results_historic.Rd
man/survey_load_translation.Rd
man/survey_options_for.Rd
man/survey_participant_previous_season.Rd
man/survey_participant_season.Rd
man/survey_question_id.Rd
man/survey_recode.Rd
man/survey_recode_all.Rd
man/survey_recodings.Rd
man/survey_rename_columns.Rd
man/survey_single_table.Rd
man/survey_template.Rd
man/survey_variable_available.Rd
man/survey_variable_recoding.Rd
man/survey_variables_like.Rd
man/symptoms.Rd
man/syndromes.prettify.Rd
man/syndromes.set.Rd
man/syndromes_influenzanet_2011.Rd
man/syndromes_influenzanet_2012.Rd
man/syndromes_rs_2018.Rd
man/theme_no_axis.Rd
man/theme_with.Rd
man/titlelize.Rd
man/upset_plot.Rd
man/validate_platform.Rd
man/var_labels.Rd
man/variable_available.Rd
man/verticalize_incidence.Rd
man/week_of_date.Rd
man/week_stamp.Rd
man/with_ggplot.Rd
man/x_axis_vertical.Rd
tests/testthat.R
tests/testthat/test_episode.R
tests/testthat/test_geographic.R
tests/testthat/test_platform.R
tests/testthat/test_survey.R
tests/testthat/test_syndrome.R
tests/testthat/test_weeks.R
tools/bootstrap.R
vignettes/.gitignore
vignettes/geography.Rmd
vignettes/introduction.Rmd
vignettes/platform-file.Rmd
vignettes/surveys.Rmd
vignettes/workspace.Rmd
