extractEMBOSS_pepdigest: A function to convert Pepdigest EMBOSS output into a nice &...

In currocam/FascinRSCA: R and Python code for SCA with fascin protein

A function to convert Pepdigest EMBOSS output into a nice & tidy DataFrame

Description

A function to convert Pepdigest EMBOSS output into a nice & tidy DataFrame

Usage

extractEMBOSS_pepdigest(table_raw, seqs, headers, col_mode = "", extra = FALSE)

Arguments

table_raw	Pepdigest EMBOSS output tsv
seqs	A character vector containing fasta sequences
headers	A characyer vector containing fasta headers
col_mode	A character with the name of proteolytic enzyme or reagent.
extra	A boolean, if extra is TRUE, columns with Score, Mol_weigth, Cterm and Nterm are created.

Value

It returns a DataFrame containing the results in a 'tidy' format.

currocam/FascinRSCA documentation built on March 21, 2022, 6:29 a.m.