tests/testthat/_snaps/pairwise_alignment_sequence_identity.md

In currocam/taxa2hmmer: Get more out of homologous sequence search with HMMER

pairwise_alignment works

c(87.3015873015873, 81.25, 82.7586206896552, 65, 61.2903225806452, 
58.0645161290323, 49.2537313432836, 48.4848484848485, 37.9310344827586, 
49.1803278688525, 62.0689655172414, 81.0344827586207, 45.0980392156863, 
56.5217391304348, 39.2156862745098, 44.5544554455446, 48.5981308411215, 
40.6779661016949, 38.7755102040816, 86.4406779661017, 57.3529411764706, 
56.7164179104478, 55.2238805970149, 52.2388059701493, 49.2537313432836, 
35, 49.2063492063492, 71.6666666666667, 56.8965517241379, 51.7241379310345, 
51.7241379310345, 51.7241379310345, 34.4827586206897, 51.7241379310345, 
44.4444444444444, 38.0952380952381, 35.8208955223881, 34.6666666666667, 
27.4193548387097, 36.3636363636364, 55.0724637681159, 47.6923076923077, 
48.5294117647059, 35.0877192982456, 50.8474576271186, 44.7761194029851, 
41.4285714285714, 46.551724137931, 45.9016393442623, 86.1538461538462, 
31.5789473684211, 81.3559322033898, 31.7460317460317, 81.3559322033898, 
29.3103448275862)

pairwise_alignment works with furrr

c(87.3015873015873, 81.25, 82.7586206896552, 65, 61.2903225806452, 
58.0645161290323, 49.2537313432836, 48.4848484848485, 37.9310344827586, 
49.1803278688525, 62.0689655172414, 81.0344827586207, 45.0980392156863, 
56.5217391304348, 39.2156862745098, 44.5544554455446, 48.5981308411215, 
40.6779661016949, 38.7755102040816, 86.4406779661017, 57.3529411764706, 
56.7164179104478, 55.2238805970149, 52.2388059701493, 49.2537313432836, 
35, 49.2063492063492, 71.6666666666667, 56.8965517241379, 51.7241379310345, 
51.7241379310345, 51.7241379310345, 34.4827586206897, 51.7241379310345, 
44.4444444444444, 38.0952380952381, 35.8208955223881, 34.6666666666667, 
27.4193548387097, 36.3636363636364, 55.0724637681159, 47.6923076923077, 
48.5294117647059, 35.0877192982456, 50.8474576271186, 44.7761194029851, 
41.4285714285714, 46.551724137931, 45.9016393442623, 86.1538461538462, 
31.5789473684211, 81.3559322033898, 31.7460317460317, 81.3559322033898, 
29.3103448275862)

pairwise_alignment works with local and PID2

c(91.6666666666667, 86.6666666666667, 87.037037037037, 86.4406779661017, 
85.1851851851852, 89.4736842105263)

pairwise_alignment works with overlap and PID3

c(88.7096774193548, 83.8709677419355, 82.7586206896552, 79.1044776119403, 
81.0344827586207, 87.9310344827586)

pairwise_alignment works with local and PID4

c(65.0887573964497, 80.6201550387597, 78.3333333333333, 58.6206896551724, 
55.7575757575758, 81.6)

currocam/taxa2hmmer documentation built on April 10, 2022, 11:02 a.m.