runall_csls_budget: Run all functions needed to calculate water budget for a CSLS...
In cvoter/isoH2Obudget: Lake Water Budget Using Stable Isotopes

Description Usage Arguments Details Value

Runs all major functions in the CSLSiso package, from loading in raw data to the final water balance for one of the CSLS lakes. Can be calculated on a monthly basis (annual = FALSE) or based on all available data (annual = TRUE).

runall_csls_budget(
  lake,
  threshold = 0.01,
  start_date = NULL,
  end_date = NULL,
  annual = FALSE
)

`lake`	name of lake (e.g., Pleasant, Long, or Plainfield)
`threshold`	minimum median difference between lake levels and groundwater levels during the month of measurement in order to classify groundwater measurement.
`start_date`	optional start date to use for analysis (first day of the month) in POSIXct. If not provided, defaults to NULL and timeseries is based on months with isotope samples.
`end_date`	optional end date to use for analysis (last day of the month) in POSIXct. If not provided, defaults to NULL and timeseries is based on months with isotope samples.
`annual`	defaults to FALSE to calculate water balance on a monthly basis. If TRUE, calculates the annual balance instead.

Loaded data includes the following data in a list format, where each lake has its own data frame. For example, to access groundwater levels for Pleasant Lake, the command would be: gw_levels <- CSLSdata::gw_levels[["Pleasant"]].

weather, hourly weather data including "date", "atmp" (air temperature, deg C), "P" (precipitation, mm), "RH" (relative humidity, percent), "Rs" (solar radiation, MJ), and "wind" (wind speed, m/s)
lst_HOBO, hourly lake surface temperature from HOBO loggers, including "date", "ltmp" (lake surface temperature, deg C), and "elev_m" (elevation of the sensor, meters above mean sea level)
isotopes, stable isotope measurements including "date", "lake", "site_id", "d18O" measurement, and "d2H" measurement
lake_levels, daily lake levels (meters above mean sea level) including "date", "
gw_levels, daily groundwater levels including date, site_no, obs_type ("GW"), level_m (level in meters above mean sea level), and site_id (CSLS site id)
dictionary, links site ids and characteristics together with columns for lake, obs_type ("LK", "GW", "P"), site_id (e.g., "LL-01"), SWIMS_station_id, USGS_id, WBIC, static_iso_class (e.g., "upgradient", "lake", "precipitation"), lat_deg, long_deg, elev_m, and bouy_bottom_elev_m

h2o_bal, a data frame with the following columns:

`date`	observation dates, last day of the month (if monthly) or date interval (if annual) (POSIXct)
`P_m3`	precipitation for month or year (m3)
`E_m3`	evapotranspiration for month or year (m3)
`GWin_m3`	groundwater inflow to the lake for month or year (m3)
`GWout_m3`	groundwater outflow to the lake for month or year (m3)
`dV_m3`	change in lake volume for month or year (m3)
`P_mm`	precipitation for month or year (mm)
`E_mm`	evapotranspiration for month or year (mm)
`GWin_mm`	groundwater inflow to the lake for month or year (mm)
`GWout_mm`	groundwater outflow to the lake for month or year (mm)
`dV_mm`	change in lake volume for month or year (mm)
`mean_vol_m3`	mean lake volume during the month or year (m3)
`mean_area_m2`	mean lake area during the month or year (m2)