dispMat: Methylation Levels to Dispersion

In cxystat/AFb: B-spline Based Adaptive Fisher Method

Description

Methylation Levels to Dispersion

Usage

dispMat(M, pos, bandwidth = 5509, kernel = c("normal", "box"))

Arguments

M	A matrix of methylation levels with dimensions n by K (n subjects, K CpG sites).
pos	A vector of CpG locations (in base pairs). Elements should be of the same order as the columns of M.
bandwidth	The bandwidth for ksmooth. Default is 5509, 20 % of the median gene length according to UCSC Genome build hg38.
kernel	The kernel to be used for ksmooth.

Value

A matrix of methylation dispersion with dimensions n by K.

See Also

ksmooth

cxystat/AFb documentation built on June 17, 2021, 7:30 p.m.