Files in cytomining/cytominer

Methods for Image-Based Cell Profiling

.Rbuildignore

.gitignore

.travis.yml

CITATION.cff

CONTRIBUTING.md

DESCRIPTION

LICENSE

LICENSE.md

NAMESPACE

NEWS.md R/aggregate.R R/correlation_threshold.R R/count_na_rows.R R/covariance.R R/cytominer-package.R R/drop_na_columns.R R/drop_na_rows.R R/extract_subpopulations.R R/generalized_log.R R/husk.R R/mark_outlier_rows.R R/normalize.R R/replicate_correlation.R R/sparse_random_projection.R R/spherize.R R/stratify.R R/svd_entropy.R R/transform.R R/variable_importance.R R/variable_select.R R/variance_threshold.R README.md

_pkgdown.yml

cran-comments.md

cytominer.Rproj

docs/404.html

docs/CONTRIBUTING.html

docs/LICENSE-text.html

docs/LICENSE.html

docs/articles/cytominer-pipeline.html

docs/articles/cytominer-pipeline_files/header-attrs-2.7/header-attrs.js

docs/articles/index.html

docs/authors.html

docs/bootstrap-toc.css

docs/bootstrap-toc.js

docs/docsearch.css

docs/docsearch.js

docs/index.html

docs/link.svg

docs/news/index.html

docs/pkgdown.css

docs/pkgdown.js

docs/pkgdown.yml

docs/reference/Rplot001.png

docs/reference/aggregate.html

docs/reference/correlation_threshold.html

docs/reference/count_na_rows.html

docs/reference/covariance.html

docs/reference/cytominer-package.html

docs/reference/drop_na_columns.html

docs/reference/drop_na_rows.html

docs/reference/extract_subpopulations.html

docs/reference/find_significant_pcs.html

docs/reference/generalized_log.html

docs/reference/generate_component_matrix.html

docs/reference/husk.html

docs/reference/index.html

docs/reference/mark_outlier_rows.html

docs/reference/normalize.html

docs/reference/replicate_correlation.html

docs/reference/sparse_random_projection.html

docs/reference/spherize.html

docs/reference/stratify.html

docs/reference/svd_entropy.html

docs/reference/transform.html

docs/reference/variable_importance.html

docs/reference/variable_select.html

docs/reference/variance_threshold.html

inst/extdata/fixture_htqc.sqlite

inst/extdata/fixture_intensities_shapes.sqlite

inst/extdata/metadata.csv

logo/README.md

logo/just-icon.png

logo/just-icon.svg

logo/with-text-for-dark-bg.png

logo/with-text-for-dark-bg.svg

logo/with-text-for-light-bg.png

logo/with-text-for-light-bg.svg

man/aggregate.Rd man/correlation_threshold.Rd man/count_na_rows.Rd man/covariance.Rd man/cytominer-package.Rd man/drop_na_columns.Rd man/drop_na_rows.Rd man/extract_subpopulations.Rd man/find_significant_pcs.Rd man/generalized_log.Rd man/generate_component_matrix.Rd man/husk.Rd man/mark_outlier_rows.Rd man/normalize.Rd man/replicate_correlation.Rd man/sparse_random_projection.Rd man/spherize.Rd man/stratify.Rd man/svd_entropy.Rd man/transform.Rd man/variable_importance.Rd man/variable_select.Rd man/variance_threshold.Rd

renv.lock

renv/.gitignore

renv/activate.R

renv/settings.dcf

tests/testthat.R tests/testthat/test-aggregate.R tests/testthat/test-correlation_threshold.R tests/testthat/test-count_na_rows.R tests/testthat/test-cytominer.R tests/testthat/test-drop_na_columns.R tests/testthat/test-drop_na_rows.R tests/testthat/test-extract_subpopulations.R tests/testthat/test-generalized_log.R tests/testthat/test-husk.R tests/testthat/test-mark_outlier_rows.R tests/testthat/test-normalize.R tests/testthat/test-replicate_correlation.R tests/testthat/test-sparse_random_projection.R tests/testthat/test-spherize.R tests/testthat/test-svd_entropy.R tests/testthat/test-variance_threshold.R

vignettes/.gitignore

vignettes/cytominer-pipeline.Rmd

cytomining/cytominer documentation built on July 5, 2023, 3:34 a.m.