Description Usage Arguments Author(s)
Import aligned reads from a BAM file into a GRanges
object.
1 2 | bam2ranges(file, bamindex = file, min.mapq = 10, pairedEndReads = FALSE,
chromosomes = NULL)
|
file |
Bamfile with aligned reads. |
bamindex |
Bam-index file with or without the .bai ending. If this file does not exist it will be created and a warning is issued. |
min.mapq |
Minimum mapping quality when importing from BAM files. |
pairedEndReads |
Set to |
David Porubsky
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