localizeSCE: Wrapper function for the YeastSCElocatoR package

Description Usage Arguments Author(s)

Description

Wrapper function for the YeastSCElocatoR package

Usage

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localizeSCE(inputDirectory, outputDirectory = "./SCE_analysis",
  chromosomes = NULL, min.mapq = 10, minSeg = 0, minSize = 0,
  smooth = 1, method = "CBS", hotspots = FALSE, read.len = 50)

Arguments

inputDirectory

Folder with BAM files to analyze

outputDirectory

Folder to output the results. If it does not exist it will be created.

min.mapq

Minimum mapping quality when importing from BAM files.

minSeg

A minimal length of continuous segments of a certain value

smooth

A number of subsequent integers considered as errors

Author(s)

David Porubsky


daewoooo/HapSCElocatoR documentation built on May 5, 2019, 11:08 p.m.