Description Usage Arguments Author(s)
Wrapper function for the YeastSCElocatoR package
1 2 3 | localizeSCE(inputDirectory, outputDirectory = "./SCE_analysis",
chromosomes = NULL, min.mapq = 10, minSeg = 0, minSize = 0,
smooth = 1, method = "CBS", hotspots = FALSE, read.len = 50)
|
inputDirectory |
Folder with BAM files to analyze |
outputDirectory |
Folder to output the results. If it does not exist it will be created. |
min.mapq |
Minimum mapping quality when importing from BAM files. |
minSeg |
A minimal length of continuous segments of a certain value |
smooth |
A number of subsequent integers considered as errors |
David Porubsky
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