example_bams: Example BAM-files

Description Format Details Source References

Description

A set of BAM-files for demonstration purposes of the functions in package breakpointR.

Format

A BAM files with aligned reads with one read per line.

Details

BAM files contain single-end reads aligned to GRCh38 reference genome.
Read sequences and quality values have been removed in order to reduce the file size.

Source

A lyphoblastoid cell line of Puerto Rican origin (HG00731). Raw reads were aligned to the GRCh38/hg38 reference assembly. The file has been downsampled to 20% of the coverage to reduce the file size.

References

https://www.biorxiv.org/content/early/2017/09/23/193144


daewoooo/strandseqExampleData documentation built on May 22, 2019, 11:51 p.m.