example_results: Results for example BAM-files

In daewoooo/strandseqExampleData: Strand-seq data for demonstration purposes

Description

Localized breakpoints in example BAM-files, generated by the breakpointR package.

Format

Files containing BreakPoint object.

Details

A BreakPoint object is a list containing given elements: ID, fragments, deltas, breaks, confint, counts, lib.metrics and params.

• ID - unique identifier for a given library.

• fragments - A GRanges-class object that stores analyzed sequencing reads.

• deltas - A GRanges-class object that stores binned minus reads differences.

• breaks - A GRanges-class object that stores localized breaks.

• confint - A GRanges-class object that stores confidence intervals around localized breaks.

• counts - A GRanges-class object that stores directional read counts in between localized breaks.

• lib.metrics - A named vector with some useful library metrics.

• params - A named vector with user defined parameters used to run breakpointR package.

Source

A lyphoblastoid cell line of Puerto Rican origin (HG00731). Raw reads were aligned to the GRCh38/hg38 reference assembly.

References

https://www.biorxiv.org/content/early/2017/09/23/193144

daewoooo/strandseqExampleData documentation built on May 22, 2019, 11:51 p.m.