calc_metab: Runs LoLinR over whole SDR arrays and runs
In daflealab/genlabfunc: Useful Packages for the Hall Lab
Description
Usage
Arguments
Value
Examples
Description
calc_metab takes the LoLinR method of
estimating the best fitting change in oxygen consumption
but applies this to a nested dataframe of many SDR plate runs.
Time is converted from min to hours automatically.
Usage
1
calc_metab(nested_df, metab_method = "pc", alpha_value = 0.25)
Arguments
nested_df
The nested df imported using import_metab().
Time must still be in minutes (e.g. Time_min)
metab_method
A string. Either "pc" or "eq".
"pc"" is the suggested method by Colin for oxygen consumption data.
It is the default.
alpha_value
Default at 0.25.
Value
A nested tibble with the model, summary and slopes (per hour change) as list columns.
Examples
1
test_data_merged <- calc_metab(test_data_merged)
daflealab/genlabfunc documentation built on May 27, 2019, 7:25 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Examples
Description
calc_metab takes the LoLinR method of
estimating the best fitting change in oxygen consumption
but applies this to a nested dataframe of many SDR plate runs.
Time is converted from min to hours automatically.
Usage
1 | calc_metab(nested_df, metab_method = "pc", alpha_value = 0.25)
|
Arguments
nested_df |
The nested df imported using import_metab(). Time must still be in minutes (e.g. Time_min) |
metab_method |
A string. Either "pc" or "eq". "pc"" is the suggested method by Colin for oxygen consumption data. It is the default. |
alpha_value |
Default at 0.25. |
Value
A nested tibble with the model, summary and slopes (per hour change) as list columns.
Examples
1 | test_data_merged <- calc_metab(test_data_merged)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.