import_sdr_data: Import SDR data files
In daflealab/genlabfunc: Useful Packages for the Hall Lab

Description Usage Arguments Value Examples

View source: R/import_sdr_data.R

import_sdr_data imports a directory of SDR output files. Files must be in the xlsx format. SDR IDs will be extracted along with the Run ID and Oxygen consumption data.

1 2	import_sdr_data(dataset_dir, sheet_number = 1, skip_rows = 12, Trim_time = 20, ...)

`dataset_dir`	A string indicating the location of the directory of xlsx files to import.
`sheet_number`	An integer. The sheet number of the excel workbook that should be imported. Defaults to 1.
`skip_rows`	An integer. The number of rows of the excel sheet to skip on import. Defaults to 12.
`Trim_time`	An integer. Initial sampling times to skip. Defaults to 20. No Sensor errors are set to missing (NA).
`...`

A nested tibble by SDR, with Date, Time, Cell, and Oxygen values

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test_data <- import_metab(dataset_dir = "./friA_18NOV/test/",
                           sheet_number = 1, skip_rows = 12,
                           Trim_time = 0)