rareMETALS.range.multiAllele: Function to perform multi-allelic association test

Description Usage Arguments Value

Description

Function to perform multi-allelic association test

Usage

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rareMETALS.range.multiAllele(score.stat.file, cov.file, tabixRange, rangeName,
  maf.cutoff, rvTest)

Arguments

score.stat.file

The file names for score statistics files;

cov.file

The file names for covariance matrix files;

tabixRange

The vectors of tabix ranges;

rangeName

The name of the genes that are represented by the corresponding tabixRange;

maf.cutoff

The MAF cutoffs;

rvTest

The rare variant association tests to be performed. Options include GRANVIL, SKAT or VT;

Value

A matrix of results; each row being the result for a gene;


dajiangliu/rareMETALS documentation built on May 25, 2019, 4:21 p.m.