EPM_check_guide: Check Metadata from Imported XML Files.

In dami82/easyPubMed: Search and Retrieve Scientific Publication Records from PubMed

Check Metadata from Imported XML Files.

Description

Analyze the Metadata from different XML files that were imported using easyPubMed and identify which records / files can be merged together and which ones to exclude. Only files with the same unique ID can be merged together a this step. The goal is to re-build a consistent easyPubMed object.

Usage

EPM_check_guide(x)

Arguments

x	Data.frame including information from the imported XML files. The following columnnames are expected: 'index', 'file', 'JobUniqueId', 'JobQuery', 'JobBatch'.

Value

Data.frame identical to 'x' with an additional *numeric) column ('pass' column).

Author(s)

Damiano Fantini, [e-mail]

References

https://www.data-pulse.com/dev_site/easypubmed/

Examples

gx <- data.frame(
  index = c(1, 2, 3, 4, 5),
  JobUniqueId = rep('xyz0x', 5),
  JobQuery = rep('test_query', 1),
  JobBatch = c(1, 2, 3, 4, 3),
  JobBatchNum = rep(4, 5),
  stringsAsFactors = FALSE)
easyPubMed:::EPM_check_guide(gx)

dami82/easyPubMed documentation built on Jan. 4, 2024, 6:21 a.m.