sortByMutations: Sort Data by Mutation Type.

In dami82/mutSignatures: Decipher Mutational Signatures from Somatic Mutational Catalogs

Sort Data by Mutation Type.

Description

Reorder a mutationSignatures, mutationCounts, data.frame, or matrix object by sorting entries by mutation type.

Usage

sortByMutations(x)

Arguments

x	an object storing mutation count data

Details

This function is part of the user-interface set of tools included in mutSignatures. This is an exported function.

Value

an object of the same class as x, with entries sorted according to mutation types.

Author(s)

Damiano Fantini, [e-mail]

References

More information and examples about mutational signature analysis can be found here:

1. Official website: http://www.mutsignatures.org

2. More info and examples about the mutSignatures R library: https://www.data-pulse.com/dev_site/mutsignatures/

3. Oncogene paper, Mutational Signatures Operative in Bladder Cancer: https://www.nature.com/articles/s41388-017-0099-6

Examples

A <- data.frame(S1=1:5, S2=5:1, S3=1:5)
rownames(A) <- c("A[A>T]G", "A[C>G]G", "T[A>T]G", "T[C>G]T", "T[C>G]G")
mutSignatures::sortByMutations(A)

dami82/mutSignatures documentation built on Jan. 24, 2023, 12:21 a.m.