shadia: shadia: American shad dam passage performance standard models...

In danStich/shadia: American shad dam passage performance standard model for R

shadia: American shad dam passage performance standard models for R

Description

The shadia package provides an interface for running the American shad dam passage performance standard model. It includes a limited number of functions intended to be called directly by the user, and a large number of supporting internal functions that are visible to promote transparency in the model.

Functions called directly

connecticutRiverModel
kennebecRiverModel
merrimackRiverModel
mohawkHudsonRiverModel
penobscotRiverModel
sacoRiverModel
susquehannaRiverModel
addStochList
CI
invlogit
substrRight

Internal functions

annualUpstream
additionalEggsProcessing
annualUpstream
assignFishToRoutes
assignFishToRoutes
createPUMatrix
defineHabitat
defineHydroSystem
defineOutputVectors
definePassageRates
downstreamMigration
fillOutputVectors
fwFishingMort
innerLoopSampling
nextGeneration
populationMatrices
postSpawnMortality
processCohorts
processPopulation
scalePop
setScalar
writeData

danStich/shadia documentation built on Nov. 2, 2023, 6:43 a.m.