GDCquery_ATAC_seq: Retrieve open access ATAC-seq files from GDC server

Description Usage Arguments Value Examples

View source: R/query.R

Description

Retrieve open access ATAC-seq files from GDC server https://gdc.cancer.gov/about-data/publications/ATACseq-AWG Manifest available at: https://gdc.cancer.gov/files/public/file/ATACseq-AWG_Open_GDC-Manifest.txt

Usage

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GDCquery_ATAC_seq(tumor = NULL, file.type = NULL)

Arguments

tumor

a valid tumor

file.type

Write maf file into a csv document

Value

A data frame with the maf file information

Examples

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 query <- GDCquery_ATAC_seq(file.type = "txt")
## Not run: 
   GDCdownload(query)

## End(Not run)
query <- GDCquery_ATAC_seq(tumor = "BRCA",file.type = "bigWigs")
## Not run: 
   GDCdownload(query,method = "client")

## End(Not run)

daniel615212950/TCGAbiolinks documentation built on Dec. 19, 2021, 8:06 p.m.