getSampleFilesSummary: Retrieve summary of files per sample in a project

In daniel615212950/TCGAbiolinks: TCGAbiolinks: An R/Bioconductor package for integrative analysis with GDC data

Description

Retrieve the numner of files under each data_category + data_type + experimental_strategy + platform Almost like https://portal.gdc.cancer.gov/exploration

Usage

getSampleFilesSummary(project, legacy = FALSE, files.access = NA)

Arguments

project	A GDC project
legacy	Access legacy database ? Deafult: FALSE
files.access	Filter by file access ("open" or "controlled"). Default: no filter

Value

A data frame with the maf file information

Examples

   summary <- getSampleFilesSummary("TCGA-UCS")
## Not run: 
   summary <- getSampleFilesSummary(c("TCGA-OV","TCGA-ACC"))

## End(Not run)

daniel615212950/TCGAbiolinks documentation built on Dec. 19, 2021, 8:06 p.m.