make_mzXML: This function converts .raw files into .mzXML files for...

Description Usage Arguments Details Author(s)

View source: R/make_mzXML.R

Description

This function converts .raw files into .mzXML files for analysis with Maven and XCMS.

Usage

1
make_mzXML(polarity)

Arguments

polarity

the output polariy. This can be either 'pos', 'neg', 'both', or 'no' for no polarity separation.

Details

For this function to work, one needs to define where the msconvert.exe file is located eg D:\pwiz\msconvert.exe. This is the location of the program you will use to convert the MS files. Also, you will need to go into the folder that contains the .raw files. The function will create directories based on the polarity paramter that is specified.

Author(s)

Daniel Braas


danielbraas/MetabFUN documentation built on Oct. 9, 2020, 9:49 a.m.