| average_spectrum | Generating consensus spectra | 
| library_generator | Generating spectral library from raw LC-MS/MS chromatograms | 
| library_manager | Searching and managing the spectral library | 
| library_merger | Extracting or generating representative scans for each... | 
| library_reporter | Generating a summary of the spectral library | 
| library_similarity | Matching query spectrum to existing library | 
| library_visualizer | Visualize selected mass spectra in the spectral library | 
| library_visualizer_similarity | Visualizing query spectrum matched to existing library | 
| metadata_adduct_editor | Create additional metadata for library generation | 
| meta_editor | Create additional metadata for library generation | 
| process_MS1 | Read and combine targeted MS1 scans from one LC-MS/MS file | 
| process_MS2 | Read and combine targeted MS2 scans from one LC-MS/MS file | 
| readMGF2 | Extracting metadata and a list of spectra from mgf file | 
| writeMGF2 | Writing metadata and a list of spectra to mgf files | 
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