Files in danro9685/SparseSignatures
SparseSignatures
.Rbuildignore
.github/.gitignore
.github/workflows/check-bioc.yml
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/data.R
R/data.import.R
R/deprecated.data.import.R
R/deprecated.mutation.factor.R
R/deprecated.utils.R
R/signatures.assignment.lasso.R
R/signatures.discovery.lasso.R
R/visualization.R
README.md
_pkgdown.yml
data/background.rda
data/background2.rda
data/cv_example.rda
data/imported_data.rda
data/lambda_range_example.rda
data/mutation_categories.rda
data/nmf_LassoK_example.rda
data/patients.rda
data/ssm560_reduced.rda
data/starting_betas_example.rda
inst/NEWS.Rd
man/background.Rd
man/background2.Rd
man/cv_example.Rd
man/import.trinucleotides.counts.Rd
man/imported_data.Rd
man/lambdaRangeAlphaEvaluation.Rd
man/lambdaRangeBetaEvaluation.Rd
man/lambda_range_example.Rd
man/mutation_categories.Rd
man/nmfLasso.Rd
man/nmfLassoBootstrap.Rd
man/nmfLassoCV.Rd
man/nmf_LassoK_example.Rd
man/patients.Rd
man/patients.plot.Rd
man/sigAssignmentCV.Rd
man/sigAssignmentEvaluation.Rd
man/sigAssignmentLasso.Rd
man/signatures.plot.Rd
man/ssm560_reduced.Rd
man/startingBetaEstimation.Rd
man/starting_betas_example.Rd
tests/testthat.R
tests/testthat/test_algorithm.R
vignettes/.gitignore
vignettes/v1_introduction.rmd
vignettes/v2_using_the_package.rmd
