scrappyPlot: Make a scrappy plot

In darlanminussi/scrappy: R package for plotting quality of scRNA cells.

Description

Scrappy plot uses the percentage of mitochondrial gene expression to plot the single-cell data as emojis corresponding to their quality score in a low dimensional reductions.

Usage

scrappyPlot(object, dimred, great_qual = 5, good_qual = 10, ok_qual = 15)

Arguments

object	Single cell object. Scrappy recognizes SingleCellExperiment objects or Seurat objects
dimred	dimension reductions object to be accessed.
great_qual	Percentage of mitochondrial gene expression for a cell to be considered great quality (smaller than).
good_qual	Percentage of mitochondrial gene expression for a cell to be considered good quality (smaller than).
ok_qual	Percentage of mitochondrial gene expression for a cell to be considered ok quality (smaller than). Any other percentage above is considered poop quality.

darlanminussi/scrappy documentation built on Aug. 31, 2020, 12:45 a.m.