Description Usage Arguments Value Examples
Generates Figure 2. Returns list with ggplot2 figures. Optionally exports as png.
1 2 |
listsf |
List of five sf objects created by prepTabcover.R |
listTab |
List of data.frames created by resTab.R |
pBasin |
Subbasin cover polygons. |
pBasinSp |
Extent polygon covering subbasins in species range of occurance. |
pBasinAcc |
Subbasin cover polygons with human access proportion, from demog_river.R (SAGA (grid tools, grids stats for poly)). |
rastAc |
Acessibility raster. |
make_png |
Logical (TRUE/FALSE). Generate png version of Fig 1. |
List of plots created by ggplot2. Optionally exports as png.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 | ## Not run:
# Load shapefiles needed
# These large files are not available via github package.
# Download "shapes.zip" from :
# https://drive.google.com/open?id=1QQArA7pPLemUVQTKx7PxigsQXKpOG0YQ
# For the code below to work,
# extract files in "shapes.zip" to cmartr/inst/shape .
# This function needs 3 shapefiles as listed below.
# Subbasin cover polygons
B <- system.file("shape/amazon_orinoco.shp", package="cmartr")
# Extent polygon covering subbasins in species range of occurance.
# From prepBasin.R .
Bsp <- system.file("shape/speciesBasin.shp", package="cmartr")
# Human access from demog_river.R . Need to add earlier in prep stages.
BAc <- system.file("shape/basinsum4326.shp", package="cmartr")
# Human aceesibility raster
ras1 <- system.file("raster/uas.grd", package="cmartr")
# run
lsf <- prepTabcover(pBasin = B, pBasinSp = Bsp,
pBasinC = BC, riv = rin, make_shape = FALSE)
lt <- resTab(listsf = lsf)
lfig2 <- resFig2(listsf = lsf, listTab = lt, pBasin = B,
pBasinSp = Bsp, pBasinAcc = BAc, rastAc = ras1, make_png = FALSE)
## End(Not run)
|
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.