Files in databio/PCRSA
Coordinate Covariation Analysis
.Rbuildignore
.travis.yml
DESCRIPTION
NAMESPACE
NEWS
R/COCOA.R
R/data.R
R/permutation.R
R/utility.R
R/visualization.R
README.md
_pkgdown.yaml
data/atf3_chr1.RData
data/brcaATACCoord1.RData
data/brcaATACData1.RData
data/brcaMCoord1.RData
data/brcaMetadata.RData
data/brcaMethylData1.RData
data/brcaPCScores.RData
data/brcaPCScores657.RData
data/esr1_chr1.RData
data/gata3_chr1.RData
data/nrf1_chr1.RData
data/rsScores.RData
inst/CITATION
license.txt
man-roxygen/GRList.R
man-roxygen/absVal.R
man-roxygen/checkInput.R
man-roxygen/genomicSignal.R
man-roxygen/olList.R
man-roxygen/pOlapList.R
man-roxygen/regionSet.R
man-roxygen/returnCovInfo.R
man-roxygen/rsOL.R
man-roxygen/rsScores.R
man-roxygen/scoringMetric.R
man-roxygen/signal.R
man-roxygen/signalCol.R
man-roxygen/signalCoord.R
man-roxygen/signalCoordType.R
man-roxygen/targetVar.R
man-roxygen/variationMetric.R
man-roxygen/verbose.R
man/COCOA.Rd
man/aggregateSignal.Rd
man/aggregateSignalGRList.Rd
man/atf3_chr1.Rd
man/brcaATACCoord1.Rd
man/brcaATACData1.Rd
man/brcaMCoord1.Rd
man/brcaMetadata.Rd
man/brcaMethylData1.Rd
man/brcaPCScores.Rd
man/brcaPCScores657.Rd
man/convertToFromNullDist.Rd
man/esr1_chr1.Rd
man/gata3_chr1.Rd
man/getGammaPVal.Rd
man/getMetaRegionProfile.Rd
man/getPermStat.Rd
man/getTopRegions.Rd
man/nrf1_chr1.Rd
man/plotAnnoScoreDist.Rd
man/regionQuantileByTargetVar.Rd
man/rsRankingIndex.Rd
man/rsScoreHeatmap.Rd
man/rsScores.Rd
man/runCOCOA.Rd
man/runCOCOAPerm.Rd
man/signalAlongAxis.Rd
tests/testthat.R
tests/testthat/test_all.R
vignettes/IntroToCOCOA.Rmd
