brcaMCoord1: A GRanges object with genomic coordinates for cytosines from...

brcaMCoord1R Documentation

A GRanges object with genomic coordinates for cytosines from chr1 for the package's built-in DNA methylation data

Description

Corresponds to the rows of brcaMethylData1. DNA methlyation data is Illumina 450k microarray data from breast cancer patients from The Cancer Genome Atlas (TCGA-BRCA, https://portal.gdc.cancer.gov/). Coordinates correspond to the hg38 genome version. Only selected cytosines on chr1 are included to keep the example data small.

Usage

data(brcaMCoord1)

Format

A GRanges object


databio/PCRSA documentation built on Sept. 2, 2023, 11:24 p.m.