Man pages for datapplab/SBGNview
"SBGNview: Data Analysis, Integration and Visualization on SBGN Pathways"

arc-classAn object to store arc information
changeDataIdChange the data IDs of input omics data matrix
changeIdsChange vector of input IDs to another ID type
downloadSbgnFileDownload pre-generated SBGN-ML file from GitHub
findPathwaysRetrieve pathways by keywords
glyph-classAn object to store glyph information
highlightArcsHighlight arcs by arc class
highlightNodesHighlight input nodes
highlightPathHighlight shortest path between two nodes
loadMappingTableGenerate ID mapping table from input and output ID types
mapped.idsIDs mappable by SBGNview
outputFileRetrieve output file information from a SBGNview object
outputFile-setSet or change output file information for a SBGNview object
pathways.infoInformation of collected pathways
pathways.statsNumber of pathways collected
plus-.SBGNviewGeneric function to modify SBGN graph features
print.SBGNviewGenerate image files
renderSbgnOverlay omics data on a SBGN pathway graph and output image...
sbgn.gsetsRetrieve gene list or compound list from collected databases
SBGNhub.id.mapping.tablesMapping tables available in SBGNhub
sbgnNodesExtract glyph information
SBGNviewOverlay omics data on SBGN pathway diagram and output image...
spline.arc-classAn object to store information of spline arcs
datapplab/SBGNview documentation built on June 20, 2022, 9:55 p.m.