Man pages for datashield/opal
Opal R and Datashield utils
| datashield.aggregate | Data aggregation |
| datashield.assign | Data assignment |
| datashield.build.login.data.frame.o | Builds a dataframe to login to datashield |
| datashield.command | Get an asynchronous command |
| datashield.command_result | Get result of an asynchronous command |
| datashield.command_rm | Remove an asynchronous command |
| datashield.commands | List the asynchronous commands |
| datashield.commands_rm | Remove all asynchronous commands |
| datashield.has_method | Check existence of a Datashield method by its name |
| datashield.login | Logs in and assigns variables to R |
| datashield.logout | Logout from Opal(s) |
| datashield.method | Get Datashield method by its name |
| datashield.methods | List Datashield methods |
| datashield.method_status | Status of datashield method(s) in Opal(s) |
| datashield.pkg_status | Status of datashield package(s) in Opal(s) |
| datashield.rm | Remove a R symbol |
| datashield.status | Check Datashield configuration status |
| datashield.symbols | List R symbols |
| datashield.table_status | Status of table(s) in Opal(s) |
| datashield.workspace_rm | Remove a DataSHIELD workspace from a opal. |
| datashield.workspaces | Get the DataSHIELD workspaces. |
| datashield.workspace_save | Save current session in a DataSHIELD workspace. |
| dot-authToken | Constructs the value for the Authorization header |
| dot-delete | Delete a resource |
| dot-deparse | Turn expression into character strings. |
| dot-extractJsonField | Extract JSON |
| dot-extractOpalSessionId | Extract opalsid from cookie list. |
| dot-get | Issues a request to opal for the specified resource |
| dot-getDatashieldSessionId | Extract R session Id from opal object, create a new... |
| dot-getPEMFilePath | Extract absolute path to the pem file |
| dot-getRSessionId | Extract R session Id from opal object, create a new R session... |
| dot-getSessions | Get all R session in Opal. |
| dot-handleResponse | Default request response handler. |
| dot-handleResponseLocation | Default request response Location handler. |
| dot-isContentEmpty | Check if response content is empty. |
| dot-listToJson | Simple transformation function of a list into a JSON... |
| dot-newDatashieldSession | Create a new Datashield R session in Opal. |
| dot-newSession | Create a new R session in Opal. |
| dot-opal.login | Create the opal object |
| dot-perform | Perform the request |
| dot-post | Post a request w/o body content |
| dot-put | Put a request w/o body content |
| dot-rmDatashieldSession | Remove a Datashield R session in Opal. |
| dot-rmSession | Remove a R session from Opal. |
| dot-select | Returns a list r such that r[[i]] == l[[i]][field] for all... |
| dot-url | Utility method to build urls. Concatenates all arguments and... |
| opal.as_md_table | Array to Markdown |
| opal.assign | Data or expression assignment |
| opal.assign.data | Data assignment |
| opal.assign.script | R script assignment |
| opal.assign.table | Data assignment to a data.frame |
| opal.assign.table.tibble | Data assignment to a tibble |
| opal.attribute_values | Get a vector of values (for each locale) matching the given... |
| opal.command | Get an asynchronous command |
| opal.command_result | Get result of an asynchronous command |
| opal.command_rm | Remove an asynchronous command |
| opal.commands | List the asynchronous commands |
| opal.commands_rm | Remove all asynchronous commands |
| opal.datasource | Get a datasource from a opal. |
| opal.datasources | Get datasources from a opal. |
| opal.execute | Execute a R script |
| opal.file | Get file content |
| opal.file_cp | Copy a file |
| opal.file_download | Download a file |
| opal.file_ls | List content of a folder |
| opal.file_mkdir | Make a folder |
| opal.file_mv | Move and/or rename a file |
| opal.file_read | Read a file |
| opal.file_rm | Remove a file |
| opal.file_upload | Upload a file |
| opal.file_write | Write a file |
| opal.login | Opal login |
| opal.logout | Logout from Opal(s) |
| opal.report | Opal report |
| opal.report_md | Turn a R markdown file to html. |
| opal.rm | Remove a R symbol (deprecated) |
| opal.symbol_import | Import a tibble as a table in Opal |
| opal.symbol_rm | Remove a R symbol |
| opal.symbols | List R symbols |
| opal.symbol_save | Save a tibble identified by symbol as a file of format SAS,... |
| opal.table | Get a table of a datasource from a opal. |
| opal.tables | Get tables of a datasource from a opal. |
| opal.task | Get a task from a opal. |
| opal.task_cancel | Tries to cancel a task from a opal. |
| opal.tasks | Get the tasks from a opal. |
| opal.task_wait | Wait for a task from a opal to complete. |
| opal.valueset | Get the values of an entity in a table. |
| opal.variable | Get a variable of a table from a opal. |
| opal.variables | Get variables of a table from a opal. |
| opal.version_compare | Compare |
| opal.workspace_rm | Remove a R workspace from a opal. |
| opal.workspaces | Get the R workspaces from a opal. |
| opal.workspace_save | Save the current session in a opal R workspace. |
