Description Usage Arguments Examples
Assign a Opal table, or a R expression or a R object to a R symbol in the current R session.
1 2 3 |
opal |
Opal object or list of opal objects. |
symbol |
Name of the R symbol. |
value |
The value to assign evaluated in the following order: a R expression, a function, a fully qualified name of a variable or a table in Opal or any other R object (data.frame, vector). |
variables |
List of variable names or Javascript expression that selects the variables of a table (ignored if value does not refere to a table). See javascript documentation: http://wiki.obiba.org/display/OPALDOC/Variable+Methods |
missings |
If TRUE, missing values will be pushed from Opal to R, default is FALSE. Ignored if value is an R expression. |
identifiers |
Name of the identifiers mapping to use when assigning entities to R (from Opal 2.0). |
id.name |
Add a vector with the given name representing the entity identifiers (from Opal 2.6). Default is NULL. |
updated.name |
Add a vector with the given name representing the creation and last update timestamps (from Opal 2.6). Default is NULL. |
async |
R script is executed asynchronously within the session (default is FALSE). If TRUE, the value returned is the ID of the command to look for (from Opal 2.1). |
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 | ## Not run:
# assign a list of variables from table HOP of opal object o
opal.assign(o, symbol="D", value="demo.HOP", variables=list("GENDER","LAB_GLUC"))
# assign all the variables matching 'LAB' from table HOP of opal object o
opal.assign(o, symbol="D", value="demo.HOP", variables="name().matches('LAB_')")
# assign a function and call it
opal.assign.script(o, 'hello', quote(function(x) { print(paste0('Hello ', x , '!'))}))
opal.execute(o, "hello('Mr Bean')")
# push an arbitrary data frame to the R server
opal.assign(o, "D", mtcars)
# push an arbitrary vector to the R server
opal.assign(o, "C", mtcars$cyl)
## End(Not run)
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