get_omim: Query OMIM server

In davetang/romim: R wrapper functions for the OMIM API

Description

This function builds the URL and queries the OMIM server

Usage

get_omim(
  omim_id = 100100,
  show_query = FALSE,
  text = FALSE,
  existflags = FALSE,
  allelicVariantList = FALSE,
  clinicalSynopsis = FALSE,
  seeAlso = FALSE,
  referenceList = FALSE,
  geneMap = FALSE,
  externalLinks = FALSE,
  contributors = FALSE,
  creationDate = FALSE,
  editHistory = FALSE,
  dates = FALSE,
  all = FALSE
)

Arguments

omim_id	OMIM ID. Default is 100100.
show_query	Show API query. Default is FALSE.
text	Includes the text field sections with the entry. Default is FALSE.
existflags	Include the 'exists' flags with the entry (clinical synopsis, allelic variant, gene map & phenotype map). Default is FALSE.
allelicVariantList	Includes the allelic variant list with the entry. Default is FALSE.
clinicalSynopsis	Include the clinical synopsis with the entry. Default is FALSE.
seeAlso	Includes the 'see also' field with the entry. Default is FALSE.
referenceList	Include the reference list with the entry. Default is FALSE.
geneMap	Include the gene map/phenotype map data with the entry. Default is FALSE.
externalLinks	Include the external links with the entry. Default is FALSE.
contributors	Includes the 'contributors' field with the entry. Default is FALSE.
creationDate	Includes the 'creation date' field with the entry. Default is FALSE.
editHistory	Includes the 'edit history' field with the entry. Default is FALSE.
dates	Include the dates data with the entry. Default is FALSE.
all	the above data with the entry. Default is FALSE.

Examples

get_omim(303600, geneMap = TRUE)

davetang/romim documentation built on May 11, 2021, 8:01 a.m.