tests/testthat/_snaps/ord_explore-shinytest2.md

In david-barnett/microViz: Microbiome Data Analysis and Visualization

ord_explore app works: unconstrained ords

Code
  ps
Output
  phyloseq-class experiment-level object
  otu_table()   OTU Table:         [ 70 taxa and 5 samples ]
  sample_data() Sample Data:       [ 5 samples by 11 sample variables ]
  tax_table()   Taxonomy Table:    [ 70 taxa by 6 taxonomic ranks ]
  phy_tree()    Phylogenetic Tree: [ 70 tips and 69 internal nodes ]

Code
  phyloseq::sample_variables(ps)
Output
   [1] "subject_id"              "family_id"              
   [3] "sex"                     "family_role"            
   [5] "age"                     "infant_age"             
   [7] "birth_weight"            "birth_mode"             
   [9] "c_section_type"          "antibiotics_current_use"
  [11] "number_reads"

Code
  phyloseq::sample_names(ps)
Output
  [1] "SID513122_ba_10" "SID515126_ba_10" "SID521130_ba_10" "SID604136_ba_10"
  [5] "SID606141_ba_10"

david-barnett/microViz documentation built on April 17, 2025, 4:25 a.m.