tests/testthat/_snaps/ps_join.md

In david-barnett/microViz: Microbiome Data Analysis and Visualization

full join stays the same

Code
  ps_join(x = x, y = y, match_sample_names = "ID_var", type = j)
Output
  phyloseq-class experiment-level object
  otu_table()   OTU Table:         [ 553 taxa and 280 samples ]
  sample_data() Sample Data:       [ 280 samples by 12 sample variables ]
  tax_table()   Taxonomy Table:    [ 553 taxa by 1 taxonomic ranks ]

inner join stays the same

Code
  ps_join(x = x, y = y, match_sample_names = "ID_var", type = j)
Output
  phyloseq-class experiment-level object
  otu_table()   OTU Table:         [ 533 taxa and 100 samples ]
  sample_data() Sample Data:       [ 100 samples by 12 sample variables ]
  tax_table()   Taxonomy Table:    [ 533 taxa by 1 taxonomic ranks ]

left join stays the same

Code
  ps_join(x = x, y = y, match_sample_names = "ID_var", type = j)
Output
  phyloseq-class experiment-level object
  otu_table()   OTU Table:         [ 553 taxa and 280 samples ]
  sample_data() Sample Data:       [ 280 samples by 12 sample variables ]
  tax_table()   Taxonomy Table:    [ 553 taxa by 1 taxonomic ranks ]

anti join stays the same

Code
  ps_join(x = x, y = y, match_sample_names = "ID_var", type = j)
Output
  phyloseq-class experiment-level object
  otu_table()   OTU Table:         [ 549 taxa and 180 samples ]
  sample_data() Sample Data:       [ 180 samples by 10 sample variables ]
  tax_table()   Taxonomy Table:    [ 549 taxa by 1 taxonomic ranks ]

semi join stays the same

Code
  ps_join(x = x, y = y, match_sample_names = "ID_var", type = j)
Output
  phyloseq-class experiment-level object
  otu_table()   OTU Table:         [ 533 taxa and 100 samples ]
  sample_data() Sample Data:       [ 100 samples by 10 sample variables ]
  tax_table()   Taxonomy Table:    [ 533 taxa by 1 taxonomic ranks ]

david-barnett/microViz documentation built on April 17, 2025, 4:25 a.m.