tests/testthat/_snaps/tax_transform.md

In david-barnett/microViz: Microbiome Data Analysis and Visualization

tax_transform 'maaslin2-default' chaining works

Code
  ord
Output
  psExtra object - a phyloseq object with extra slots:

  phyloseq-class experiment-level object
  otu_table()   OTU Table:         [ 130 taxa and 222 samples ]
  sample_data() Sample Data:       [ 222 samples by 8 sample variables ]
  tax_table()   Taxonomy Table:    [ 130 taxa by 3 taxonomic ranks ]

  otu_get(counts = TRUE)         [ 130 taxa and 222 samples ]

  psExtra info:
  tax_agg = "Genus" tax_trans = "compositional&log2"

  ordination of class: rda cca 
  rda(formula = OTU ~ 1, data = data)
  Ordination info:
  method = 'PCA'

david-barnett/microViz documentation built on April 17, 2025, 4:25 a.m.