tests/testthat/_snaps/taxatree_models2stats.md

In david-barnett/microViz: Microbiome Data Analysis and Visualization

tax_models2stats works

Code
  lmBirthweight_psx
Output
  psExtra object - a phyloseq object with extra slots:

  phyloseq-class experiment-level object
  otu_table()   OTU Table:         [ 61 taxa and 49 samples ]
  sample_data() Sample Data:       [ 49 samples by 11 sample variables ]
  tax_table()   Taxonomy Table:    [ 61 taxa by 5 taxonomic ranks ]

  otu_get(counts = TRUE)         [ 61 taxa and 49 samples ]

  psExtra info:
  tax_agg = "genus" tax_trans = "compositional"

  tax_models list at rank: class

  tax_stats dataframe:
  12 taxa at rank of class 
  1 terms: birth_weight

Code
  wilcox2_psx
Output
  psExtra object - a phyloseq object with extra slots:

  phyloseq-class experiment-level object
  otu_table()   OTU Table:         [ 61 taxa and 49 samples ]
  sample_data() Sample Data:       [ 49 samples by 11 sample variables ]
  tax_table()   Taxonomy Table:    [ 61 taxa by 5 taxonomic ranks ]

  otu_get(counts = TRUE)         [ 61 taxa and 49 samples ]

  psExtra info:
  tax_agg = "genus" tax_trans = "compositional"

  tax_models list at rank: phylum

  tax_stats dataframe:
  5 taxa at rank of phylum 
  2 terms: birth_mode, sex

david-barnett/microViz documentation built on April 17, 2025, 4:25 a.m.