tests/testthat/_snaps/taxatree_plotkey.md

In david-barnett/microViz: Microbiome Data Analysis and Visualization

taxatree_plotkey works as expected

Code
  attr(unlabeledKey$data, "graph")
Output
  # A tbl_graph: 62 nodes and 61 edges
  #
  # A rooted tree
  #
  # Edge Data: 61 × 7 (active)
      from    to parent            rank   prevalence label direction
     <int> <int> <chr>             <chr>       <dbl> <lgl> <fct>    
   1     1     2 root              phylum      0.8   TRUE  right    
   2     1     3 root              phylum      0.933 TRUE  right    
   3     1     4 root              phylum      1     TRUE  left     
   4     1     5 root              phylum      0.467 TRUE  left     
   5     2     6 p: Proteobacteria class       0.8   TRUE  left     
   6     3     7 p: Actinobacteria class       0.933 TRUE  right    
   7     4     8 p: Firmicutes     class       1     TRUE  right    
   8     3     9 p: Actinobacteria class       0.4   TRUE  left     
   9     5    10 p: Bacteroidetes  class       0.467 TRUE  left     
  10     4    11 p: Firmicutes     class       0.533 TRUE  left     
  # ℹ 51 more rows
  #
  # Node Data: 62 × 8
    taxon        parent rank  prevalence label .ggraph.orig_index .ggraph_layout_x
    <chr>        <chr>  <chr>      <dbl> <lgl>              <int>            <dbl>
  1 root         root   root       1     TRUE                   1           0     
  2 p: Proteoba… root   phyl…      0.8   TRUE                   2           0.0541
  3 p: Actinoba… root   phyl…      0.933 TRUE                   3           0.167 
  # ℹ 59 more rows
  # ℹ 1 more variable: .ggraph_layout_y <dbl>

Code
  attr(unlabeledKey_rect$data, "graph")
Output
  # A tbl_graph: 62 nodes and 61 edges
  #
  # A rooted tree
  #
  # Edge Data: 61 × 7 (active)
      from    to parent            rank   prevalence label direction
     <int> <int> <chr>             <chr>       <dbl> <lgl> <fct>    
   1     1     2 root              phylum      0.8   TRUE  right    
   2     1     3 root              phylum      0.933 TRUE  right    
   3     1     4 root              phylum      1     TRUE  left     
   4     1     5 root              phylum      0.467 TRUE  left     
   5     2     6 p: Proteobacteria class       0.8   TRUE  left     
   6     3     7 p: Actinobacteria class       0.933 TRUE  right    
   7     4     8 p: Firmicutes     class       1     TRUE  right    
   8     3     9 p: Actinobacteria class       0.4   TRUE  left     
   9     5    10 p: Bacteroidetes  class       0.467 TRUE  left     
  10     4    11 p: Firmicutes     class       0.533 TRUE  left     
  # ℹ 51 more rows
  #
  # Node Data: 62 × 8
    taxon        parent rank  prevalence label .ggraph.orig_index .ggraph_layout_x
    <chr>        <chr>  <chr>      <dbl> <lgl>              <int>            <dbl>
  1 root         root   root       1     TRUE                   1             0   
  2 p: Proteoba… root   phyl…      0.8   TRUE                   2            -8.03
  3 p: Actinoba… root   phyl…      0.933 TRUE                   3            -4.41
  # ℹ 59 more rows
  # ℹ 1 more variable: .ggraph_layout_y <dbl>

david-barnett/microViz documentation built on April 17, 2025, 4:25 a.m.