shao19: Gut microbiota relative abundance data from Shao et al. 2019
In david-barnett/microViz: Microbiome Data Analysis and Visualization
shao19 R Documentation
Gut microbiota relative abundance data from Shao et al. 2019
Description
A phyloseq dataset containing 1644 gut microbiome samples.
Fecal samples were collected from 596 infants. 175 mothers also provided fecal samples.
Usage
shao19
Format
large phyloseq object
Data acquisition
The processed (metaphlan3) relative abundance data were obtained using curatedMetagenomicData package version 3.4.2.
https://waldronlab.io/curatedMetagenomicData/articles/available-studies.html
A small amount of data cleaning was performed after download:
to make sample metadata more user friendly
to fill gaps in the taxonomy table.
Source
Stunted microbiota and opportunistic pathogen colonization in caesarean-section birth.
\Sexpr[results=rd]{tools:::Rd_expr_doi("10.1038/s41586-019-1560-1")}
david-barnett/microViz documentation built on April 17, 2025, 4:25 a.m.
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| shao19 | R Documentation |
Gut microbiota relative abundance data from Shao et al. 2019
Description
A phyloseq dataset containing 1644 gut microbiome samples. Fecal samples were collected from 596 infants. 175 mothers also provided fecal samples.
Usage
shao19
Format
large phyloseq object
Data acquisition
The processed (metaphlan3) relative abundance data were obtained using curatedMetagenomicData package version 3.4.2. https://waldronlab.io/curatedMetagenomicData/articles/available-studies.html
A small amount of data cleaning was performed after download:
to make sample metadata more user friendly
to fill gaps in the taxonomy table.
Source
Stunted microbiota and opportunistic pathogen colonization in caesarean-section birth. \Sexpr[results=rd]{tools:::Rd_expr_doi("10.1038/s41586-019-1560-1")}
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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