tax_names2rank: Add taxa_names as last column in phyloseq tax_table
In david-barnett/microViz: Microbiome Data Analysis and Visualization
View source: R/tax_names2rank.R
tax_names2rank R Documentation
Add taxa_names as last column in phyloseq tax_table
Description
The taxa names in your phyloseq may specify a further unique classification
of your taxa, e.g. ASVs, that is not otherwise represented in the tax_table itself.
This function fixes that, and allows you to include this level in taxatree_plots for example.
Usage
tax_names2rank(data, colname = "unique")
Arguments
data
phyloseq object, or psExtra or tax_table (taxonomyTable)
colname
name of new rank to add at right side of tax_table
Value
same class object as passed in to data
david-barnett/microViz documentation built on April 17, 2025, 4:25 a.m.
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View source: R/tax_names2rank.R
| tax_names2rank | R Documentation |
Add taxa_names as last column in phyloseq tax_table
Description
The taxa names in your phyloseq may specify a further unique classification of your taxa, e.g. ASVs, that is not otherwise represented in the tax_table itself. This function fixes that, and allows you to include this level in taxatree_plots for example.
Usage
tax_names2rank(data, colname = "unique")
Arguments
data |
phyloseq object, or psExtra or tax_table (taxonomyTable) |
colname |
name of new rank to add at right side of tax_table |
Value
same class object as passed in to data
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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