upgrade_ps_extra_to_psExtra: Convert old format "ps_extra" objects to new "psExtra"...

In david-barnett/microViz: Microbiome Data Analysis and Visualization

Convert old format "ps_extra" objects to new "psExtra" objects

Description

This will only be necessary if you have saved old format "ps_extra" objects generated by an old microViz version (< 0.10.0), and you cannot or do not want to regenerate these old format objects from your original phyloseq object.

Usage

upgrade_ps_extra_to_psExtra(ps_extra)

Arguments

ps_extra

an old format "ps_extra" object, as generated by old microViz versions (< 0.10.0)

Value

new format "psExtra" S4 object

Examples

# read your old saved 'ps_extra' object that you want to keep using
# oldObject <- readRDS("old-object-path.rds")
# newObject <- upgrade_ps_extra_to_psExtra(oldObject)
# continue with your next analysis or plotting steps...

david-barnett/microViz documentation built on April 17, 2025, 4:25 a.m.