p.omega.t: Calculates observable capture histories

Description Usage Arguments

View source: R/pomega.r

Description

Calculates an observable capture history omega, given an initial state vector,for animals available according to Markov process and allowed to move in and out of searched strip according to Brownian motion.

Usage

1
p.omega.t(t, idbn, p1, p2, Qmat, omega, IO = NULL)

Arguments

t

The time(s) bewtween 2 observers passing

idbn

The initial state distribution. If no movement assumed (IO is NULL), this is (p(up), p(down)); If movement is assumed, it is (p(in & up), p(out & up), p(in & down), p(out & down)).

p1

Probability that obs 1 detects animal that is available and in searched strip

p2

Probability that obs 2 detects animal that is available and in searched strip

Qmat

Transition intensity matrix for up-down Markov process

IO

The in-out transition probability matrix. Must either be 2x2 or 2x2xlength(t), with IO[,,i] being the in-out transition probability matrix for time t[i].


david-borchers/LCE_paper documentation built on Nov. 15, 2020, 1:33 p.m.