R/publishedTRB.R

#' Published T cell receptor beta CDR3 amino acid sequences with known
#' antigen specificity
#'
#' A database of unique productive T cell receptor beta CDR3 amino acid sequences
#' with known antigen specificity.
#'
#' @format A dataframe with 9,606 rows and 6 columns corresponding amino acid
#' sequence, PubMed ID (PMID), HLA type, antigen specificity, epitope, and
#' \% prevalence that the sequence appeared within the peripheral blood of 55
#' healthy individuals.
#' @source Antigen specific T cell receptor beta sequences were manual curated
#' from published studies with help from Edus H. Warren, Andrea Towlerton,
#' Steve House, and Will DeWitt.  Approximatley 5900 sequences were downloaded
#' from VDJserver (https://vdjdb.cdr3.net).
"publishedTRB"
davidcoffey/LymphoSeqDB documentation built on May 14, 2019, 11:09 p.m.