Man pages for davidcoffey/Nexus
For clinical data mining of the Caisis and Diamonds databases
| computeInterval | Computes statistics between first and last dates |
| computeTreatmentDuration | Computes treatment duration per line of therapy |
| extractCytogenetics | Extract FISH and cytogenetics reports |
| extractDemographics | Extract demographics |
| extractDiagnoses | Extract diagnoses |
| extractDiseaseStatus | Extract disease status |
| extractEncounters | Extract clinical encounters |
| extractLabs | Extract labs |
| extractMedicalTherapy | Extract medical therapy |
| extractPathology | Extract pathology reports |
| extractProtocols | Extract reserach protocols |
| extractRadiationTherapy | Extract radiation therapy |
| extractRadiology | Extract radiology reports |
| extractSurvival | Extract surivival information |
| filterData | Filter Data |
| filterLabs | Filter labs |
| parseKaryotype | Parse FISH karyotype strings |
| parsePlasmacells | Parse pathology reports for % plasma cells |
| parsePlasmacellsDataFrame | Parse pathology reports in a data frame for % plasma cells |
| plotLabs | Plot labs |
