parsePlasmacellsDataFrame: Parse pathology reports in a data frame for % plasma cells

In davidcoffey/Nexus: For clinical data mining of the Caisis and Diamonds databases

Description

Parses pathology reports for % plasma cells

Usage

parsePlasmacellsDataFrame(data)

Arguments

data	A data frame with columns named "PatientMRN", "PathNum", "PathNotes", and "ProcDate".

Details

pattern1

"\\d+\.*\\d*%plasmacells[^:0-9]"

pattern2

"plasmacells:\\d+\\.*\\d*%|plasmacells\\d+\\.*\\d*%"

pattern3

".{1,50}CD138.{1,50}|.{1,50}plasma.{1,50}|.{1,50}abnormal.{1,50}"

Value

Returns a data frame with extracted % plasma cells from pathology reports

davidcoffey/Nexus documentation built on March 10, 2020, 4:54 p.m.