Man pages for davidnipperess/PDcalc
An implementation of the Phylogenetic Diversity (PD) calculus in R
| bandicoot_table | A taxonomic table of living and recently extinct bandicoots |
| bandicoot_tree | Phylogenetic tree of living and recently extinct bandicoots |
| barrington_birds | A community data table of bird counts, Barrington Tops... |
| barrington_tree | Phylogenetic tree of birds of Barrington Tops National Park |
| bifurcatr | Algorithm to randomly resolve polytomies in a phylogenetic... |
| PDcalc | PDcalc: a package for the PD calculus |
| phylocurve | Generate a rarefaction curve of Phylogenetic Diversity |
| phylodiv | Phylogenetic Diversity of ecological samples |
| phylodiv.estimate | Estimate Phylogenetic Diversity from a sample |
| phylodiv.expected | Expected Phylogenetic Diversity of ecological samples |
| phylodiv.expect.secured | Expected Phylogenetic Diversity from conservation of... |
| phyloendemism | Phylogenetic Endemism of ecological samples |
| phylomatchr | Matches taxa in a set of sites with the tips of a... |
| phyloprunr | Pruning algorithm to maximise Phylogenetic Diversity for a... |
| phyloprunr.prob | Pruning algorithm to maximise gains in expected Phylogenetic... |
| phylorebelo | Greedy algorithm optimising the accumulation of Phylogenetic... |
| phyloresembl | Pairwise resemblance in Phylogenetic Diversity of ecological... |
| treemakr | Convert a table of taxonomic relationships into a... |
