barrington_tree: Phylogenetic tree of birds of Barrington Tops National Park
In davidnipperess/PDcalc: An implementation of the Phylogenetic Diversity (PD) calculus in R
barrington_tree R Documentation
Phylogenetic tree of birds of Barrington Tops National Park
Description
A phylogenetic tree of bird species observed in Barrington Tops National Park
during a survey in November 2012. The tree has 41 tips corresponding to the
bird species observed. The tree is a Maximum Clade Credibility tree extracted
from the Bayesian supertree published by Jetz et al. (2012).
Usage
data(barrington_tree)
Format
A phylo object, as used by the ape package. Branch
lengths are scaled in millions of years since divergence events.
References
Chao A, Chiu CH, Hsieh TC, Davis T, Nipperess DA
& Faith DP (2015) Rarefaction and extrapolation of phylogenetic diversity.
Methods in Ecology & Evolution 6: 380-388.
Jetz W, Thomas GH,
Joy JB, Hartmann K & Mooers AO (2012) The global diversity of birds in
space and time. Nature 491: 444-448
davidnipperess/PDcalc documentation built on Dec. 21, 2024, 4:25 p.m.
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| barrington_tree | R Documentation |
Phylogenetic tree of birds of Barrington Tops National Park
Description
A phylogenetic tree of bird species observed in Barrington Tops National Park during a survey in November 2012. The tree has 41 tips corresponding to the bird species observed. The tree is a Maximum Clade Credibility tree extracted from the Bayesian supertree published by Jetz et al. (2012).
Usage
data(barrington_tree)
Format
A phylo object, as used by the ape package. Branch
lengths are scaled in millions of years since divergence events.
References
Chao A, Chiu CH, Hsieh TC, Davis T, Nipperess DA & Faith DP (2015) Rarefaction and extrapolation of phylogenetic diversity. Methods in Ecology & Evolution 6: 380-388.
Jetz W, Thomas GH, Joy JB, Hartmann K & Mooers AO (2012) The global diversity of birds in space and time. Nature 491: 444-448
R Package Documentation
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