make_intersect_plot: Make an intersection degree plot for a set of unique...

Description Usage Arguments

View source: R/make_intersect_plot.R

Description

Make an intersection degree plot for a set of unique identifiers

Usage

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make_intersect_plot(
  IDlist,
  shortNames,
  mediumUsed,
  fracMethod,
  Yrange = c(0, 100),
  plotType = "Protein"
)

Arguments

IDlist

A list of vectors. Each list item should be a vector of unique identifiers corresponding to protein or proteoform IDs, e.g. UniProt accession numbers or proteoform record numbers from the Consortium for Top-Down Proteomics proteoform atlas. This function is deprecated in favor of 'make_intersection_degree_plot()'.

shortNames

Vector of short names

mediumUsed

Vector of media used

fracMethod

Vector of frac methods

Yrange

Percentage range to use for the Y-axis of the plot. Defaults to 'c(0,100)'.

plotType

Type of plot to create, typically "Protein" or "Proteoform".This only affects the Y-axis title and can be any string.


davidsbutcher/viztools documentation built on Oct. 5, 2020, 3:25 a.m.