Files in daynefiler/mcCNV

Call copy number variants from whole exome/whole genome sequencing data

R/cnvAggCall.R R/cnvCallCN.R R/cnvCheckCor.R R/cnvCountsToMatrix.R R/cnvGatherCounts.R R/cnvGetCounts.R R/cnvReadBam.R R/cnvSimCounts.R R/cnvSimInterval.R R/cnvSimPool.R R/utils.R R/validityChecks.R README.md inst/gatherCountsCommand.R inst/getCountsCommand.R inst/manRunScripts/calcAlpha0-Oto.R inst/manRunScripts/calcAlpha0.R inst/manRunScripts/exdepRefset.R inst/manRunScripts/idtSubset.R inst/manRunScripts/phiAnalysis.R inst/manRunScripts/priorAnalysis.R inst/manRunScripts/realDataAnalysis.R inst/manRunScripts/sim1Analysis.R inst/manRunScripts/sim1Setup.R inst/manRunScripts/sim2Analysis.R inst/manRunScripts/sim2Setup.R inst/manRunScripts/sim3Analysis.R inst/manRunScripts/sim3Setup.R inst/manRunScripts/sim4Prior.R inst/manRunScripts/sim4Setup.R man/cnvAggCall.Rd man/cnvCallCN.Rd man/cnvCheckCor.Rd man/cnvCountsToMatrix.Rd man/cnvGatherCounts.Rd man/cnvGetCounts.Rd man/cnvReadBam.Rd man/cnvSimCounts.Rd man/cnvSimInterval.Rd man/cnvSimPool.Rd man/validObjects.Rd