cnvGatherCounts: Gather saved count objects into one data.table

In daynefiler/mcCNV: Call copy number variants from whole exome/whole genome sequencing data

Description

cnvGatherCounts reads count objects stored in disk space, and combines them into a single multiple-sample count object.

Usage

cnvGatherCounts(files, glob = TRUE, ...)

Arguments

files	Character, file paths pointing to count objects; see details
glob	Logical, should the given 'files' parameter be passed to Sys.glob()? Defaults to TRUE
...	arguments passed to mclapply

Details

The 'files' parameter must point to valid count objects saved to disk using the saveRDS() function. When 'glob' is TRUE, the default, any wildcards in 'files' will be expanded.

daynefiler/mcCNV documentation built on Dec. 15, 2021, 3:58 a.m.