cnvCallCN: Call copy number-state for the given data

In daynefiler/mcCNV: Call copy number variants from whole exome/whole genome sequencing data

Description

Call copy number-state for the given data

Usage

cnvCallCN(
  counts,
  alpha = 0.05,
  prior = 0.2,
  width = 1L,
  delta = 20L,
  iterations = 30L,
  verbose = TRUE
)

Arguments

counts	data.table counts object
prior	numeric of length 1, the prior probability used to estimate copy number variants; see details
width	integer, window of contiguous intervals to calculate CN on; can provide a vector with multiple widths (defaults to 1)
delta	integer of length 1, minimum copy number state changes to stop the algorithm; see details
iterations	integer of length 1, the maximum number of iterations before stopping algorithm; see details
verbose	TRUE/FALSE

Details

Need to add

daynefiler/mcCNV documentation built on Dec. 15, 2021, 3:58 a.m.