Man pages for daynefiler/mcCNV
Call copy number variants from whole exome/whole genome sequencing data
| cnvAggCall | Aggregate CN-state calls from different widths to single call |
| cnvCallCN | Call copy number-state for the given data |
| cnvCheckCor | Calculate sample-sample & sample-pool correlations |
| cnvCountsToMatrix | Convert counts object to interval by sample matrix |
| cnvGatherCounts | Gather saved count objects into one data.table |
| cnvGetCounts | Count molecules from a bam file overlapping given intervals |
| cnvReadBam | Wrapper to Rsamtools:scanBam to load .bam file as a... |
| cnvSimCounts | Generate simulated molecule counts |
| cnvSimInterval | Generate a simulated interval |
| cnvSimPool | Generate a simulated pool of samples |
| validObjects | Functions to check for appropriate data structures |
